Friday, May 13, 2011

Analysis of PCR array data

I found what seems like a very useful Bioconductor package for the analysis of PCR data, in particular high-throughput, i.e. PCR arrays. The package is called HTqPCR.  It has data management capabilities (presumably can read raw data files), normalization and visualization methods, and limma-type models for analysis (which I presume could replace the one-gene-at-a-time mixed models approach of Yuan). The reference manual is here.

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